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Name Description Publication
PolySTest Robust statistical testing of quantitative proteomics data.

 

Schwämmle et al., 2020
HUMOS

 

eLearning web-application aimed to help teaching Orbitrap mass spectrometry

 

Bubis et al., 2020

 

ComplexBrowser

 

R based software for supervised analysis of changes in protein complex abundance and subunit co-expression in proteomic datasets

 

Michalak et al., 2019

 

CoExpresso

 

Tool to investigate the co-regulatory behavior and its significance of protein subunits in known protein complexes

 

Chalabi et al., 2019

 

ProtProtocols and IsoProt

 

Containerized workflows for proteomics data analysis

 

Griss et al., 2019

 

Citrullia

 

Confident identification of citrullinated peptide

 

Larsen et al., 2020

 

topdownR

 

Automatic and systemic investigation of MS/MS fragmentation methods on an orbitrap instrument platform and systematic analysis of the resultant spectra.

 

Shliaha et al., 2018

 

VSClust

 

Feature-based variance-sensitive clustering of omics data.

 

Schwämmle et al., 2018

 

SuperQuant

 

Quantitative proteomics data processing approach that uses complementary fragment ions to identify multiple coisolated peptides in tandem mass spectra allowing for their quantification.

 

Gorshkov et al., 2015

 

A2b2-restrictor

 

Deconvolution of multiple fragmented peptides using the relation between a2/b2 and the yn-2 ions found in HCD spectra.

 

Kryuchkov et al., 2014

 

CrossTalkDB

 

Platform to collect, statistically assess and analyze multiply modified proteins and provide a quantitative estimation of PTM crosstalk

 

Schwämmle et al., 2014

 

PhosphoSiteLocalizer

 

An approach for phospho-site localization by the combined use of peptide fragmentation with both CID and ETD.

 

Hansen et al., 2012

 

MASSAI

 

A software tool for the analysis of data from chemical cross-linking experiments.

 

Rasmussen et al., 2011

 

GPMAW

 

Software tool for analyzing proteins and peptides

 

GitHub projects

 

Source code and documentation of current and former software developments

 

Bitbucket projects

 

Source code and documentation of current and former software developments

 

Last Updated 27.07.2024